rs28213104 SNP Detail

Summary

• ID
  rs28213104
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79104829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGCCGGC GTGGGTCAGG
  TAGGCCATCT ATAACTGTGG GATCCTCTTC TTCCTGGTGA GGGCCCAGGC TAGTATTTCT
  GGAACAACCC TGTTGCAGGA CCCACAGTGA TCACTATTTA GGAAATGTGT CTGCAAACAG
  TGTTGGGAAC ACCACAGGAG GAAGAGGCCG GAGTAGAAGA TGAAATTATT CCTTGCAGTG
  Y
  GGAGCTGTGA TTTCCTAGCC CCTCTGGGCA GGATGTGCAA TGCACTGTCC CTGTCCCATA
  CACCTCAGGT CTTGGATTTC CCAGCCCAGA TTGTGGCCGT TCCCTCACAC TGCAGGCTTT
  GGCGCCCCCT GCCGGCCCCG GAGAGCCGTG CCACGCTCCG AGTCCCAGCG ATGCCAGAAG
  GGCATGTCAC TGCTGGGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37151727	NES08467758	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C		C	C		T
ss323759317	CHEV_11_79027505	CHEVERUD	SCREENING_POP	f	SNP						T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs28213104					SNP	C	C	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37151727	NES08467758	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79104829 () rs orientation: forward

Symbol	Name	Function Class
Gm11200	predicted gene 11200	760 bp downstream
Gm74268	predicted gene, 74268	590 bp downstream
Rr402771	regulatory region 402771	64 bp upstream
Rr452198	regulatory region 452198	within coordinates
Rr452199	regulatory region 452199	119 bp proximal