rs28213103 SNP Detail

Summary

• ID
  rs28213103
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79104998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTAGAAG ATGAAATTAT
  TCCTTGCAGT GCGGAGCTGT GATTTCCTAG CCCCTCTGGG CAGGATGTGC AATGCACTGT
  CCCTGTCCCA TACACCTCAG GTCTTGGATT TCCCAGCCCA GATTGTGGCC GTTCCCTCAC
  ACTGCAGGCT TTGGCGCCCC CTGCCGGCCC CGGAGAGCCG TGCCACGCTC CGAGTCCCAG
  Y
  GATGCCAGAA GGGCATGTCA CTGCTGGGGC AGGATTAAGT CACTAGAAAG AAAGGAAATG
  AGTCACCACT CTTCGCAGCT GGGGGCGGCC TGGGGAGAGT GTCGAGATAA GGATACAGGA
  ACTAGGGACA ATGGCGGGAA GTGAGAGGAA TGTGGGCCCA GGACAGCCTT CAGTACCCTC
  TGCACCCTGG ACCAGCAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37151726	NES08467759	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C		C	C		T
ss323759321	CHEV_11_79027674	CHEVERUD	SCREENING_POP	f	SNP						T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs28213103					SNP	C	C	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37151726	NES08467759	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79104998 () rs orientation: forward

Symbol	Name	Function Class
Gm11200	predicted gene 11200	929 bp downstream
Gm74268	predicted gene, 74268	421 bp downstream
Rr402771	regulatory region 402771	within coordinates
Rr452198	regulatory region 452198	within coordinates
Rr452199	regulatory region 452199	29 bp distal