rs28213101 SNP Detail

Summary

• ID
  rs28213101
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79105372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCCTCTGC ACCCTGGACC
  AGCAAGGGAA CCCTCCGAGG GAGGCAATAG GGGTGGGACG GGCTGAACCT TGGGTTGTTG
  GAAGAGAATG GGACAGAGGA CAGCCCAGGG CGCCCATATC ATCTTTCCCA CATCCATTGA
  ACTTCCTAAA AACCTTAGCT AGACTTCCTG AGAACTCCTG TAAGGCCCTT AGCATAAGAC
  W
  CAAACTGTAA GAACACCCCA ACACTCGCCA GGGAACATGG GCAGTGTAAA CATGGGTCGT
  GCTATTTCCA GCTATGGAGT CTATTTTCCA GAAGGAAAGT GTTCCCTCAG TAGTAAAGAT
  CTCTGTAGTC CTTGCCCGGG GATTTAGGAG AGTTGGCCTT CGACCTCAAA ATAGCTCTGG
  TCCCATCTGG ATTAAGATGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37151724	NES08467761	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A	A		T
ss323759325	CHEV_11_79028048	CHEVERUD	SCREENING_POP	f	SNP							T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs28213101					SNP	A	A	A	A	A	A	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37151724	NES08467761	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79105372 () rs orientation: forward

Symbol	Name	Function Class
Gm11200	predicted gene 11200	1303 bp downstream
Gm74268	predicted gene, 74268	47 bp downstream
Rr402771	regulatory region 402771	178 bp downstream
Rr452198	regulatory region 452198	within coordinates
Rr452199	regulatory region 452199	403 bp distal