rs28213099 SNP Detail

Summary

• ID
  rs28213099
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79105838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAATGTT CCTTCGTTAA
  GTAGTCATCC CTTTGTCCTG AAAAAATAAG ATAACTTTAT GTTCTATCTC AGACAAGAAG
  GGCTTTCCAT GTGACCTTCC AAGGTGGCCC ACTCGAGTTG CCCCTCATGT CTCAGGTGTG
  TGTGTTGAGT TCCCTCAGTA GGTCTCTACT TCCTGGAGGG CCTTTCCTCT GTTGTTCCTT
  K
  GAGCCAGAAT TGAGACAGTC ACCAGTGGAA CTGGGTCTGC TAGAGAGTCA TGGCCAGTGG
  GCAATTGGAG AAGAAGTAAT GGACCCACCA GGAAATATCC CACTGGAAAG AGAAGAGCAG
  AAATTATTTT CACATATGAA CATGTCTGGG CCTGCCAAAG GGGTGCCTAG AGTCCTCCAG
  TCCCTTAGGT GATGATTCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37151722	NES08467763	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T		T	T	T		G
ss323759333	CHEV_11_79028514	CHEVERUD	SCREENING_POP	f	SNP								G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28213099					SNP	T	T	T	T	T	T	T	G	T	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37151722	NES08467763	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79105838 () rs orientation: forward

Symbol	Name	Function Class
Gm11200	predicted gene 11200	1769 bp downstream
Gm74268	predicted gene, 74268	within coordinates
Rr402771	regulatory region 402771	644 bp downstream
Rr452198	regulatory region 452198	310 bp distal
Rr452199	regulatory region 452199	869 bp distal