rs28210509 SNP Detail

Summary

• ID
  rs28210509
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101718433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCGCTTAGA CCTGGAAGAA
  CAGTATTCAG CCTGCAGTAA TAAGAATGAA CCAAAAGGTG GCGCTCCCAT ACACATGACA
  ACCCAGTACT ACACAGACAG ATGTTTGCTC AGATCTGGAA ATATTACCAT GGCAATATAA
  GTCACTTATC TTTACCCAAG TTTTCGTTAC ACTCTCTAGA TCTCACAGAA AGCTTCTAAC
  R
  TTCGGGCAAA GTAGCAGCCA TACAAATCCC AAGCGTTTGC ACCACTGTGC ATGTGCTCAC
  TAGCTCAGGC CGCATAAAAA GCTTCGGACA CTCAGACAGG TTCCTCAGCA CTTCTCAAAC
  CTAGATTCAC CATGGGAACG CAAGCCACTC GGTCGTTCTG CTCTGCAGAT CTCGCAGACA
  GCGCAGACAA ATTCAGTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38311135	NES09516564	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28210509					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38311135	NES09516564	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101718433 () rs orientation: forward

Symbol	Name	Function Class
Rr596209	regulatory region 596209	43 bp distal
Rr596210	regulatory region 596210	217 bp distal
Rr596211	regulatory region 596211	133 bp distal