rs28210507 SNP Detail

Summary

• ID
  rs28210507
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101718516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTACTACA CAGACAGATG
  TTTGCTCAGA TCTGGAAATA TTACCATGGC AATATAAGTC ACTTATCTTT ACCCAAGTTT
  TCGTTACACT CTCTAGATCT CACAGAAAGC TTCTAACATT CGGGCAAAGT AGCAGCCATA
  CAAATCCCAA GCGTTTGCAC CACTGTGCAT GTGCTCACTA GCTCAGGCCG CATAAAAAGC
  Y
  TCGGACACTC AGACAGGTTC CTCAGCACTT CTCAAACCTA GATTCACCAT GGGAACGCAA
  GCCACTCGGT CGTTCTGCTC TGCAGATCTC GCAGACAGCG CAGACAAATT CAGTGTTCAG
  ACAGGCGAGG AGCAGGAAGG TTGCCAGTGT TGCAAACGTA AAAAGACAAA CACCTAGACT
  AGTTTTGCAG GTGCCAAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38311133	NES09516567	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28210507					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38311133	NES09516567	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101718516 () rs orientation: forward

Symbol	Name	Function Class
Rr596209	regulatory region 596209	126 bp distal
Rr596210	regulatory region 596210	300 bp distal
Rr596211	regulatory region 596211	216 bp distal