rs28210506 SNP Detail

Summary

• ID
  rs28210506
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101718535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGCTCAG ATCTGGAAAT
  ATTACCATGG CAATATAAGT CACTTATCTT TACCCAAGTT TTCGTTACAC TCTCTAGATC
  TCACAGAAAG CTTCTAACAT TCGGGCAAAG TAGCAGCCAT ACAAATCCCA AGCGTTTGCA
  CCACTGTGCA TGTGCTCACT AGCTCAGGCC GCATAAAAAG CTTCGGACAC TCAGACAGGT
  Y
  CCTCAGCACT TCTCAAACCT AGATTCACCA TGGGAACGCA AGCCACTCGG TCGTTCTGCT
  CTGCAGATCT CGCAGACAGC GCAGACAAAT TCAGTGTTCA GACAGGCGAG GAGCAGGAAG
  GTTGCCAGTG TTGCAAACGT AAAAAGACAA ACACCTAGAC TAGTTTTGCA GGTGCCAAGA
  CCCTCCAGAG CAGTAGTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38311132	NES09516568	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		T	T	T	T		T
ss321231589	CHEV_4_101533943	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28210506					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38311132	NES09516568	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101718535 () rs orientation: forward

Symbol	Name	Function Class
Rr596209	regulatory region 596209	145 bp distal
Rr596210	regulatory region 596210	319 bp distal
Rr596211	regulatory region 596211	235 bp distal