rs28199342 SNP Detail

Summary

• ID
  rs28199342
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:100252262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGTAAGA ATATCTGTCG
  CTTTTCAGGA GTGTTCTGCC CAGTTTGGGA ACAGGCCTCT CAACGGGTCA CTGTAGTAGA
  ACAGAGTTTG TGCCGGATGC TGGAGAGTGT ATCCCTTCTT GTGGATCACT GGTGACTTTG
  GGAGAGCATC TTCCAGGAGG AAAGGCCACA CAGAAATGAA AGGATGAAGA CATTAAACCA
  Y
  GTGAAGGAAA GCGAGGGTGG ACATCCTGGC AAGAAGCAGC CAATACAAAA GGCTAGATGG
  TGTATTGAGC AACTACAAGC TGCTCTTACG TTCTAGGGAT TAAAGAGTGC TGAAGATGTG
  GCTTGGGCCC TGTGATTACT ATGTGGTGGG ACTGTCACCA AGGGACTTTG CACTAGACAG
  CCAGGGAACA ATTGCGAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38316772	NES09523706	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28199342					SNP	T	T	T	T	T	T	C	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38316772	NES09523706	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100252262 () rs orientation: forward

Symbol	Name	Function Class
Gm35760	predicted gene, 35760	within coordinates
Ror1	receptor tyrosine kinase-like orphan receptor 1	Intron
Rr595987	regulatory region 595987	621 bp distal
Rr595988	regulatory region 595988	172 bp proximal