rs28199338 SNP Detail

Summary

• ID
  rs28199338
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:100252478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTGC GAGGACAAAT GGTCTAATAT
  S
  ATACTAGGTG TTCCCTTCTA CCACA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss38316768	NES09523710	PERLEGEN	MM_PANEL2	f	SNP		C			C	C		G
ss147110539	ENSMUSSNP920978	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		G
ss321227040	CHEV_4_100067886	CHEVERUD	SCREENING_POP	f	SNP				C			G
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs28199338					SNP	C	C	G	C	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38316768	NES09523710	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100252478 () rs orientation: forward

Symbol	Name	Function Class
Gm35760	predicted gene, 35760	within coordinates
Ror1	receptor tyrosine kinase-like orphan receptor 1	Intron
Rr595987	regulatory region 595987	837 bp distal
Rr595988	regulatory region 595988	within coordinates