rs28199331 SNP Detail

Summary

• ID
  rs28199331
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:100253885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATTA TATACCTTTA GAGGGATGAC
  S
  CATCTTACTT TCACATTCTT GCTTG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38316761	NES09523448	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C			C	C		C	C		G
ss45655912	mCV22699502	ABI	CRAMUS_MOUSE	f	SNP		C	C					G	G
ss147110559	ENSMUSSNP5308336	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
ss321227046	CHEV_4_100069293	CHEVERUD	SCREENING_POP	f	SNP												C			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs28199331					SNP	C	C	C	C	C	C	C	G	G	C	C	C	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38316761	NES09523448	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100253885 () rs orientation: forward

Symbol	Name	Function Class
Gm35760	predicted gene, 35760	within coordinates
Ror1	receptor tyrosine kinase-like orphan receptor 1	Intron
Rr595988	regulatory region 595988	865 bp distal