rs28198480 SNP Detail

Summary

• ID
  rs28198480
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:104453514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTCAAAT CAGAAAACCC
  ACCAGACAGT AGGGCTCTTG CAAGGAACAG ACAGCCTGAT TCTGGGCAAG CTGGGAGGAA
  ACCCTTTGAA ATGTCCCTAT CATCTAGCCT GCGAGTCAGA GGGAGGTACC AAAGGAGGGG
  GACATTGTTC TTGCTAATAA TTTAGAAGGT AATCTCCGTA TTGACTCCAG GCTAGAACAT
  Y
  CAGTCCCTAA TTGTACTCTC ATCTCTGTGA ACTAGAAAAT TCCCAGGCAG CGGCACCACT
  AATTCTGAGG CAGTGTGACT TCAGTATGGA AACTTCTTTT CTCCTGACGC TTGATGTGAA
  ATACGTTACT GAAGCAAGGC CATAAATATT TCCAGAAGGG TCACCATGTG CCAGGCAGAG
  TGCTAAGAGC ATCATAACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38298799	NES09509939	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28198480					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38298799	NES09509939	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:104453514 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dab1	disabled 1			Intron
				Noncoding-Transcript-Variant
Rr596483	regulatory region 596483			1199 bp proximal
Rr596484	regulatory region 596484			1746 bp proximal