rs28198474 SNP Detail

Summary

• ID
  rs28198474
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:104454877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTACAGAA ACAATAATCT
  TGAGTGTGAA ATATCTTTTA TTTGGCCATT AACAGGCTTT AGCAACCAAC CTGGGGTGGG
  AGGCCATGCC TGTCTCCAGT AGACTCTGTG GCCAATTCCC TTGTGTTATA GAAGTGCTAA
  TCACCTCCCT TCCTGGAACC TGACTCCTGG AGGTGTTTGT TTATAATGAA GTGTCTGCAG
  W
  GCAACTTTGA GTGTCAGACT TCAATATTGA CAGTGCCTCC TGCTCCAGAA CAAGGAACCT
  CCAATGGCCT CTGTGAGGCC TGTTCAAACT GGGCTGTTGG CTCCATGCCT AAGAAATGAG
  CCTGATTTAA ATTCAGGAAA GAGTGCACCT CCAGTCTAGA GGGTGAGCAG GTTATGATGG
  GGTACAGTCA TTCCTGCCTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss38298793	NES09509835	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	A		A	T	A		T
ss321241247	CHEV_4_104270285	CHEVERUD	SCREENING_POP	f	SNP											A				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs28198474					SNP	T	T	T	T	T	T	A	T	T	A	A	A	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38298793	NES09509835	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:104454877 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dab1	disabled 1			Intron
				Noncoding-Transcript-Variant
Rr596483	regulatory region 596483			within coordinates
Rr596484	regulatory region 596484			383 bp proximal