rs28198471 SNP Detail

Summary

• ID
  rs28198471
• Variation Type
  SNP
• Alleles
  A/C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:104455452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGCACAC TGACTGGCTG
  CTGTAGAACA AAGGCATAAG TTCGCCCATT TAGCCATTCA GGAGACCTGA GCTCTATGCT
  GTACCCCGTG GCTCTAAGCT GTACCATTTG CCACACCAGG AACAGCTGAA TCAATCTTTG
  TTTCCATGGA GCTCAAGCAT AGAGAAGAAG GCTAAGAAAA CAAGGTTAGC AAAACACCAC
  V
  AGTGCCAAAA CAGATGCCAA AAATGGATAA AGTGAAAAAG TATGCAAGCC TATTAAGAAC
  ATGCAGGGCA CCAGGAATTC AGTGGTCAGC TGACCCAACA GAGACTTTTC CTTGATTGGA
  GTTCATGGCC TAATAAGGAG GAGAGCTGTT AAGCAGATTA GTGCAAATGA GATTAATCTA
  CTGCAAAAGT GCATAGGAAT                                            
  
  V = A/C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38298790	NES09509838	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G		G	G	G	G		G
ss321241255	CHEV_4_104270860	CHEVERUD	SCREENING_POP	f	SNP											C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28198471					SNP	G	G	G	G	G	G	A	G	G	G	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38298790	NES09509838	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:104455452 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dab1	disabled 1			Intron
				Noncoding-Transcript-Variant
Rr596483	regulatory region 596483			360 bp distal
Rr596484	regulatory region 596484			within coordinates