rs28198293 SNP Detail

Summary

• ID
  rs28198293
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:103277817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGATCTTGA ATGAAGCTAA
  CTGCTGTTGG TTTCCATTTC TTTACACTTG TGCATAATTC CATCAAATAA GGGATTGTAT
  ACCCTTATAT CCCTTCAGTC TATACCCTAG CCCCACTACT CTACTTGTGT CTGAAACACA
  ACCAACCAAT TCAGGGATAC AAGGATTCTA TGCAATATTT GTAAAGTTCT TGGGACTCAT
  W
  ACTCTTGGGA CCCATGCATT TTCACCATAA AGGACTGGGC TGGCATCATT AACTTCATCG
  TATAGAAGAG ACTTACCTTA CCTTGAGATC ACACAGCAGA GATAAAGATC TGGTGTCCAC
  ATGTGACCAC TTGGGTTCTA AAGATGTATG AGTTTTCCTA TTGGCTGATG AGGATTAAGA
  TCTTTAAGGT TGTCAGGACC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38304912	NES09506851	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	A		T	A	A		A
ss321237090	CHEV_4_103093225	CHEVERUD	SCREENING_POP	f	SNP										T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28198293					SNP	T	T	T	T	T	T	A	T	A	T	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38304912	NES09506851	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:103277817 () rs orientation: forward

Symbol	Name	Function Class
Gm12718	predicted gene 12718	within coordinates
Rr596398	regulatory region 596398	977 bp proximal