rs28198273 SNP Detail

Summary

• ID
  rs28198273
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:103278926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGGGAAGCC TGTTTACTGA GGCTGTCCTC
  CTGTTGGGAA GTACAGAAGT GCCCAGTCCG CTCTTCCCCT AACAGAGTAT ATTCCTGATC
  TTGGGGTCAA GTTCCTGACA AATGACTGCT GGGTCTTGGG AGGGACTGAG GTCATCCTAA
  Y
  TGCTCCAAAG TGCTTATCGA GGCAGGGAGA AAAGCAAGGG CAGGAATGCA AAGAATTTCC
  ACAGTATTCT CTCATGAGCT GTAAGCAGGT ATGCAGAGAC ACAGGGGAAA CAGCAAGGCA
  CCCTCCTGCC TGGCTTGGAG GGAAGTGGAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38304892	NES09506876	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T		C	T	C		C
ss321237118	CHEV_4_103094334	CHEVERUD	SCREENING_POP	f	SNP										C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28198273					SNP	C	C	C	C	C	C	C	C	T	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38304892	NES09506876	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:103278926 () rs orientation: forward

Symbol	Name	Function Class
Gm12718	predicted gene 12718	within coordinates
Rr596398	regulatory region 596398	within coordinates