rs28194231 SNP Detail

Summary

• ID
  rs28194231
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:102872021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCAGCCT TGGATTTTCA
  TTTTGGTTTC ACAAGCTGCT GATTAAGAGG AAGGGCTCCA TCTCCAAAGA CCTCCTTCTC
  TGGTCATTTC TAACTTGCTA CCTTAGGAAT GCCTAATGGT CATCGAATTT GATTCACACT
  AAGTAAGTAG TAGTTCACTG TGTATCGGGA AACATCCATT CAGCTGTTCA GCTTTAGACA
  Y
  ATTTCTTTAA CTCTCTCCTG ACTGCTTTCT CCTGTTAAAG ATGATGATAA AGTACTGTCC
  CTCCCTTAGA GGTTAACTGC AGCTCAAGGG TGAAGGTGAT GTTTAAAGAC CAAACGCAAT
  GAGCACCCAA CCTGTTGTTG ATGGCATTCA TAGACAGCAT TACTAAGATC AGCACTAGGG
  CTGAACAGAC CCTATTATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss38306363	NES09522870	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs28194231					SNP	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38306363	NES09522870	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102872021 () rs orientation: forward

Symbol	Name	Function Class
Rr596350	regulatory region 596350	1941 bp proximal