rs28194230 SNP Detail

Summary

• ID
  rs28194230
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:102872148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGATTCAC ACTAAGTAAG
  TAGTAGTTCA CTGTGTATCG GGAAACATCC ATTCAGCTGT TCAGCTTTAG ACACATTTCT
  TTAACTCTCT CCTGACTGCT TTCTCCTGTT AAAGATGATG ATAAAGTACT GTCCCTCCCT
  TAGAGGTTAA CTGCAGCTCA AGGGTGAAGG TGATGTTTAA AGACCAAACG CAATGAGCAC
  Y
  CAACCTGTTG TTGATGGCAT TCATAGACAG CATTACTAAG ATCAGCACTA GGGCTGAACA
  GACCCTATTA TCACAACCCA CAAGAGGACT CAGATGACAG TAGTATAATA GTTGAAAAGG
  TTTTTGCGAT AGCCCTATTT TCTCCTTTTA TCTAGGAAGA CATCCAATGG CATAACAATG
  GCTTTACCAG CTAGGCCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss38306362	NES09522871	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs28194230					SNP	C	C	C	C	C	T	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38306362	NES09522871	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102872148 () rs orientation: forward

Symbol	Name	Function Class
Rr596350	regulatory region 596350	1814 bp proximal