rs28194228 SNP Detail

Summary

• ID
  rs28194228
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:102872317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGATGTTTA AAGACCAAAC
  GCAATGAGCA CCCAACCTGT TGTTGATGGC ATTCATAGAC AGCATTACTA AGATCAGCAC
  TAGGGCTGAA CAGACCCTAT TATCACAACC CACAAGAGGA CTCAGATGAC AGTAGTATAA
  TAGTTGAAAA GGTTTTTGCG ATAGCCCTAT TTTCTCCTTT TATCTAGGAA GACATCCAAT
  K
  GCATAACAAT GGCTTTACCA GCTAGGCCTT GGTTTCTCAA GTGCTAGGAT AAAAATGAAA
  AAGTCCTTTT ATCTCTGTAA GACAGAGGCA AAATAAAGGA AGCTTAGGCT ACAAGAAGGA
  GAACATCCCT CATCCTCTGA ATGCCTGCAG CTTAGAGGAA CTGGTTGATG AGTATATGAC
  CCCTGACTAT TCTCGGAATC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
ss38306360	NES09522873	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
rs28194228					SNP	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38306360	NES09522873	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102872317 () rs orientation: forward

Symbol	Name	Function Class
Rr596350	regulatory region 596350	1645 bp proximal