rs28193089 SNP Detail

Summary

• ID
  rs28193089
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101853975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATACCAC CTACACATGC
  GGAGTGTTCA CATGTCTTGT ACTTTAAAAC ATCAGATAAG GGATGATTTA TACCAAACAA
  ATGATGGCAC TGAGCAGAAA GCCAAAAGGA AATTAAGTCT TAGTGAAGTG GGTAAGAGTT
  TCAGGGGAGC AGGCTAGTCC TTTGGAACTG GGAGGTGTTT GATCTACTCT GAAGGGTACC
  S
  GAAGAAAAAA GTCCCCAGGG CAACTGACCC ATTAGAGTCC TCATGACAAA TTGACTGCTT
  TAGTTTCCAA AATTCCTCTT TCAGAAATAT GTGTCCAGCG TTGTCTGGAA CCAGATTCTC
  TGCCTGCACA CTCTGCTCAG AAAGATTGTG TGGGAAGCCA CTCTCAGAAG AGAGCACAGC
  TGGGTTCAGT AGCTTACTCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss38310809	NES09511841	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	C	C	C	C	C		C	C	C		G
ss321231980	CHEV_4_101669383	CHEVERUD	SCREENING_POP	f	SNP										G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs28193089					SNP	C	C	G	C	C	C	C	C	C	G	C	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38310809	NES09511841	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101853975 () rs orientation: forward

Symbol	Name	Function Class
Rr376932	regulatory region 376932	67 bp upstream
Rr596214	regulatory region 596214	1675 bp proximal
Rr596215	regulatory region 596215	1945 bp proximal