rs28193087 SNP Detail

Summary

• ID
  rs28193087
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101854567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCTAGAA AAATGACAGT
  TCTGTAACAG ATGTAGAAGT AGGTTTTGAG AAAGCCCTTA TAAACATGCA ATATTTTAAA
  TGCCAATAAA TCACAATCAA GAGTTTGAGA ATCAAATCCA GTTGAAGACA AGCATCTTGA
  AGGAAAACCA TATGAAGGGA CTCTACAAAA TGAAATCTGT TGCCATTGTC TGGTATATTT
  W
  CAGGAGTTTG GTTAAAGCTG AAATTTAGAT TTGTGTGTAG CATGGCTTGA ACTTGAAGCC
  TTCAGTTTGG AAGGACAGGT TCATCTTGGT CAGGATAGTG TATGCTTATG CTGTTTGCGT
  CATTATTGAA AGCACTTCAT TAGCATTCTG GAGCAACTTG TTAGTGTTGG AATGTGACTT
  AGGAAATAGC AAGATAGGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss38310807	NES09511843	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T		T	A		A
ss321231982	CHEV_4_101669975	CHEVERUD	SCREENING_POP	f	SNP								A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs28193087					SNP	T	T	T	T	T	T	T	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38310807	NES09511843	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101854567 () rs orientation: forward

Symbol	Name	Function Class
Rr376932	regulatory region 376932	within coordinates
Rr596214	regulatory region 596214	1083 bp proximal
Rr596215	regulatory region 596215	1353 bp proximal