rs28193086 SNP Detail

Summary

• ID
  rs28193086
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101854611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAGAAAG CCCTTATAAA
  CATGCAATAT TTTAAATGCC AATAAATCAC AATCAAGAGT TTGAGAATCA AATCCAGTTG
  AAGACAAGCA TCTTGAAGGA AAACCATATG AAGGGACTCT ACAAAATGAA ATCTGTTGCC
  ATTGTCTGGT ATATTTTCAG GAGTTTGGTT AAAGCTGAAA TTTAGATTTG TGTGTAGCAT
  R
  GCTTGAACTT GAAGCCTTCA GTTTGGAAGG ACAGGTTCAT CTTGGTCAGG ATAGTGTATG
  CTTATGCTGT TTGCGTCATT ATTGAAAGCA CTTCATTAGC ATTCTGGAGC AACTTGTTAG
  TGTTGGAATG TGACTTAGGA AATAGCAAGA TAGGTGGGTA CTAACCAGCT CTTACCAGGA
  AATGAAGAGA AAAAGAGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38310806	NES09511845	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28193086					SNP	G	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38310806	NES09511845	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101854611 () rs orientation: forward

Symbol	Name	Function Class
Rr376932	regulatory region 376932	within coordinates
Rr596214	regulatory region 596214	1039 bp proximal
Rr596215	regulatory region 596215	1309 bp proximal