rs28193085 SNP Detail

Summary

• ID
  rs28193085
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101854657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACAATCAA GAGTTTGAGA
  ATCAAATCCA GTTGAAGACA AGCATCTTGA AGGAAAACCA TATGAAGGGA CTCTACAAAA
  TGAAATCTGT TGCCATTGTC TGGTATATTT TCAGGAGTTT GGTTAAAGCT GAAATTTAGA
  TTTGTGTGTA GCATGGCTTG AACTTGAAGC CTTCAGTTTG GAAGGACAGG TTCATCTTGG
  Y
  CAGGATAGTG TATGCTTATG CTGTTTGCGT CATTATTGAA AGCACTTCAT TAGCATTCTG
  GAGCAACTTG TTAGTGTTGG AATGTGACTT AGGAAATAGC AAGATAGGTG GGTACTAACC
  AGCTCTTACC AGGAAATGAA GAGAAAAAGA GTCCAGACAC TCCCTCCTGG CTCTCCTGTT
  ACCATCAAGG ACATTTTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss38310805	NES09511846	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	C	T	T		C	T	C		C
ss321231983	CHEV_4_101670065	CHEVERUD	SCREENING_POP	f	SNP										C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs28193085					SNP	T	T	C	T	T	T	C	T	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38310805	NES09511846	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101854657 () rs orientation: forward

Symbol	Name	Function Class
Rr376932	regulatory region 376932	within coordinates
Rr596214	regulatory region 596214	993 bp proximal
Rr596215	regulatory region 596215	1263 bp proximal