rs28193084 SNP Detail

Summary

• ID
  rs28193084
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101854837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGACAGG TTCATCTTGG
  TCAGGATAGT GTATGCTTAT GCTGTTTGCG TCATTATTGA AAGCACTTCA TTAGCATTCT
  GGAGCAACTT GTTAGTGTTG GAATGTGACT TAGGAAATAG CAAGATAGGT GGGTACTAAC
  CAGCTCTTAC CAGGAAATGA AGAGAAAAAG AGTCCAGACA CTCCCTCCTG GCTCTCCTGT
  Y
  ACCATCAAGG ACATTTTTGA CACCTTAATG GTGATGTTTG AAAGCCTAAA TGGGAGCCGG
  GCGTGGTGGT GCACGCCTTT AATCCCAGCA CTCCGGAGGC AGAGGCAGGC AGATTTCTGA
  GTTCTGATTT CTGAGGCCAG CCTGGTCTAC AAAGTGAGTT CCAGGACAGC CAGGGCTATA
  CAGAGAAACC CTGTCTCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss38310804	NES09511848	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		T	T	T		C
ss321231984	CHEV_4_101670245	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs28193084					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38310804	NES09511848	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101854837 () rs orientation: forward

Symbol	Name	Function Class
Rr376932	regulatory region 376932	within coordinates
Rr596214	regulatory region 596214	813 bp proximal
Rr596215	regulatory region 596215	1083 bp proximal