rs28193082 SNP Detail

Summary

• ID
  rs28193082
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101855514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGTGGGGC TACCCACAGT
  GGACTGGACT ATCCCACATC CATCATCATA TTTGATGCCC TATAGACCAA TCTGATGGTG
  ACTGTTCTTC AATCCAGGTT TCTTCCCCTT GGATGACTCT AGCTTGTGTC AAGTGGCTAC
  AAACCAACCA GTTCTCTCAG AACGTTTCTC ATCTTGGGCT TTAGTGTTGT AAGAAAGGGA
  Y
  TGGATGATAG AAGAGAACAG AGAGGTTATG GCTCCAGATT TCCAGGGAAC TAGAAAACAC
  ACATGAGATT GTCAGTTACA CTATGCCTCC CCAAATTACA AAGATGGGCG TACAGAGAGC
  GGAATATGCG CTTACCAAGG CTACAGCCCC GCAGTTCCGC ACTGGAAAGG TGGGTTGTTT
  TCCTTTCCTA TTATGGCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38310802	NES09511694	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28193082					SNP	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38310802	NES09511694	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101855514 () rs orientation: forward

Symbol	Name	Function Class
Rr376932	regulatory region 376932	36 bp downstream
Rr596214	regulatory region 596214	136 bp proximal
Rr596215	regulatory region 596215	406 bp proximal