rs28193077 SNP Detail

Summary

• ID
  rs28193077
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101855985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTAAGTGT GGTTTGCTAG
  ATGGTATTGT TTTCACACCG TTAAGAGAAG AAAATGGTAA GGAGACACAG TCAACTGGGT
  TCCTCTAATG TTACTACTGT ACCAGGACGC CGTGGTCCTA ATTATGTGTT GGGCTCTGCT
  GCCACCTGCT GGTCATCTAG GAAAATAGAC GAAAGCTTCC CGTATGTGAT GAATACCTGA
  Y
  CCCCTGAATT TCAATCTTCT TCCAAGCTAC AGTTGAGTAG GAACAGAAAA AGTGGACTAC
  GTTTCGAACA GCAAGAACCC AAGCAGGTGA GGTGCAGAGG GCCTGTGGTT TATTCGGGGG
  ACTTGGCCAG ATTAGCATAG GAGGTCAAGG ATAGATCATC TTATGTTTTC TGTGTGATTA
  CTGGGGAAAA GCATAAGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38310797	NES09511638	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28193077					SNP	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38310797	NES09511638	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101855985 () rs orientation: forward

Symbol	Name	Function Class
Rr376932	regulatory region 376932	507 bp downstream
Rr596214	regulatory region 596214	within coordinates
Rr596215	regulatory region 596215	44 bp distal