rs28193074 SNP Detail

Summary

• ID
  rs28193074
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101856711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGATGATT GTCATGGCGG
  GGTGGGGGGG GAGGATGGAG AAACTTATCC TAATGTTCAG AGAGAGGTAT ATATGTAGCT
  GGATGCAAAT GGGGCCTGAG GTTATTGGAT GCATTGTTCC AGAGAGGGGT GTTATGTGTA
  AGTAAAAAAG CTGGGCTTCC ACTTGCGTTA TCAGAAGGCG ATTTCATAAA CCAAACCAAG
  R
  AGAGTCCCAC ATTATTAAAC CATTCCCTAT GCGTGCCTGC CTCAGTCCTC CTTGTTAATC
  ATCCTTGAAA ATTTCTGTAG GGTTGTGGGT TCCTCATCTG CTTCACCACA GGCCAGGGCT
  GCTTGGGGAG GTGGAACTCA GGGAGTTAGA CTGTGCTTAT CCCACACTGC CCTAGGCACC
  ACTCTGGGGT GGGAAAGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38310794	NES09531598	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28193074					SNP	A	A	A	A	A	A	G	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38310794	NES09531598	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101856711 () rs orientation: forward

Symbol	Name	Function Class
Rr376932	regulatory region 376932	1233 bp downstream
Rr596214	regulatory region 596214	534 bp distal
Rr596215	regulatory region 596215	770 bp distal