rs28189817 SNP Detail

Summary

• ID
  rs28189817
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101503256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGAATTGG TGAGTAGGAT
  GGTTTTTGGT GCAACATCTG GCACAGGAAA AGTCCACTTT CTCAGGTAAA GTACTCAGTC
  CAGTTGTTGT TGGCAGAAAG CAGTCGGAGA GAAACAAACA GTGTGGTTGA GGGTGGAAGG
  AGAGTGGGAC GGTTTACATC ACATAATCTC TTTATTTAAG GTGGGAAAAA CCTACCTCCT
  Y
  ACTAACAGAT CTCAGTGCTT ATAAAGGAGA AGTTAAAAAC ACAGGTCTGG CAGAGCAATT
  TTCTGAGTGC TTTTATAGGC ACCATAATCC CCCATTTTCA CCAGGTACGT TGTCCATGAT
  GCTGGCACAT GCCTGACACT GCAGACCCTG TGTACAAGCT TCATCCTGTA CACACTCTCA
  ATGGTACAAT GGCTTAACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38311844	NES09525361	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28189817					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38311844	NES09525361	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101503256 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14504	CpG island 14504	1059 bp proximal
Leprot	leptin receptor overlapping transcript	1666 bp upstream
Rr367655	regulatory region 367655	1253 bp upstream
Rr398357	regulatory region 398357	1492 bp upstream
Rr596187	regulatory region 596187	1169 bp proximal
Rr596188	regulatory region 596188	1269 bp proximal
Rr596189	regulatory region 596189	1638 bp proximal
Rr596190	regulatory region 596190	1745 bp proximal
Tssr38009	transcription start site region 38009	1617 bp upstream
Tssr38010	transcription start site region 38010	1653 bp upstream
Tssr38011	transcription start site region 38011	1683 bp upstream
Tssr38012	transcription start site region 38012	1704 bp upstream