rs28189811 SNP Detail

Summary

• ID
  rs28189811
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101503977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGATGGAT CTGGAGGAGT
  GAAAATTGGC CTTAGTTACT TGCAGGCCTG CGTTTATTTA AGGACCTAAA GAAATCCGGA
  CCCACAGAGT TTGTAATGAA TGAGGGGGAT AGACGGACGC GGTAGTTTAC ACAAAATGTT
  AATGTAGTTT GCTACAAAGC AAGCAAATCT ATACAAAAGT CAAAGATCTT ACATAGGGAT
  R
  TCTCTAATCC TGATTTCTGG TGCTGTCACT CACTCCCGAT CTCTACTATA TCAGCCACAC
  ACTCTCAAAA CAAACCACAC AGGCACACAG GAAGAGTCGT CCTGGAAGGT AACCTCTCCC
  CATCCTTATC CCGTGCCCCA CTTTTTCCAC CAGTCCTTTC AGGCAAGTTT CCTAACAGCC
  AGCCAGGGTG ATGGTGAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NZW/LacJ
ss38311838	NES09525367	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NZW/LacJ
rs28189811					SNP	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38311838	NES09525367	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101503977 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14504	CpG island 14504	338 bp proximal
Leprot	leptin receptor overlapping transcript	945 bp upstream
Rr367655	regulatory region 367655	532 bp upstream
Rr398357	regulatory region 398357	771 bp upstream
Rr596187	regulatory region 596187	448 bp proximal
Rr596188	regulatory region 596188	548 bp proximal
Rr596189	regulatory region 596189	917 bp proximal
Rr596190	regulatory region 596190	1024 bp proximal
Tssr38009	transcription start site region 38009	896 bp upstream
Tssr38010	transcription start site region 38010	932 bp upstream
Tssr38011	transcription start site region 38011	962 bp upstream
Tssr38012	transcription start site region 38012	983 bp upstream