rs28189809 SNP Detail

Summary

• ID
  rs28189809
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101504129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAAAGCAA GCAAATCTAT
  ACAAAAGTCA AAGATCTTAC ATAGGGATAT CTCTAATCCT GATTTCTGGT GCTGTCACTC
  ACTCCCGATC TCTACTATAT CAGCCACACA CTCTCAAAAC AAACCACACA GGCACACAGG
  AAGAGTCGTC CTGGAAGGTA ACCTCTCCCC ATCCTTATCC CGTGCCCCAC TTTTTCCACC
  W
  GTCCTTTCAG GCAAGTTTCC TAACAGCCAG CCAGGGTGAT GGTGAGCATC TAGAATCTCC
  TGAGGCAGAG CCTGGGCCCC AAGTCACGAC AGTGAGGAAG GGATGGACCC CAGATTGAGA
  AACAGGGCTG AGATGTCTCA GAATCCAGGA TCCCCCGAAG AGTTAAAATA AAGGAGTTAT
  TCTGAAGTAA TCAAAGTGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38311836	NES09525369	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28189809					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38311836	NES09525369	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101504129 () rs orientation: forward

Symbol	Name	Function Class
Leprot	leptin receptor overlapping transcript	793 bp upstream
Rr367655	regulatory region 367655	380 bp upstream
Rr398357	regulatory region 398357	619 bp upstream
Rr596187	regulatory region 596187	296 bp proximal
Rr596188	regulatory region 596188	396 bp proximal
Rr596189	regulatory region 596189	765 bp proximal
Rr596190	regulatory region 596190	872 bp proximal
Tssr38009	transcription start site region 38009	744 bp upstream
Tssr38010	transcription start site region 38010	780 bp upstream
Tssr38011	transcription start site region 38011	810 bp upstream
Tssr38012	transcription start site region 38012	831 bp upstream