rs28189806 SNP Detail

Summary

• ID
  rs28189806
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101504257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCACACA GGAAGAGTCG
  TCCTGGAAGG TAACCTCTCC CCATCCTTAT CCCGTGCCCC ACTTTTTCCA CCAGTCCTTT
  CAGGCAAGTT TCCTAACAGC CAGCCAGGGT GATGGTGAGC ATCTAGAATC TCCTGAGGCA
  GAGCCTGGGC CCCAAGTCAC GACAGTGAGG AAGGGATGGA CCCCAGATTG AGAAACAGGG
  Y
  TGAGATGTCT CAGAATCCAG GATCCCCCGA AGAGTTAAAA TAAAGGAGTT ATTCTGAAGT
  AATCAAAGTG GGAGGGGGCT GAGACTAGGA GCGGAGTTCC CGGCCAGCGG GGCGGTGCTG
  AACAAACTGG GAGACTACTG GAATGAAGTT CTGAGTGGCA GGAAGTAGGA CCAGTAGAGT
  CCGAGCTATG AGTGGCGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38311833	NES09525373	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28189806					SNP	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38311833	NES09525373	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101504257 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14504	CpG island 14504	58 bp proximal
Leprot	leptin receptor overlapping transcript	665 bp upstream
Rr367655	regulatory region 367655	252 bp upstream
Rr398357	regulatory region 398357	491 bp upstream
Rr596187	regulatory region 596187	168 bp proximal
Rr596188	regulatory region 596188	268 bp proximal
Rr596189	regulatory region 596189	637 bp proximal
Rr596190	regulatory region 596190	744 bp proximal
Tssr38009	transcription start site region 38009	616 bp upstream
Tssr38010	transcription start site region 38010	652 bp upstream
Tssr38011	transcription start site region 38011	682 bp upstream
Tssr38012	transcription start site region 38012	703 bp upstream