rs28189712 SNP Detail

Summary

• ID
  rs28189712
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101532652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCACAGAG AACCTTCAGC
  CTCGGCCTTT TTAGTCCTGA GATTAAAGGC ATGTACCACC ATGCCTGGCC CAGGGCATAT
  TTTTAAATGA GGAAATGGGG ACCAAAGGAA GGAACATGTA GCTGTGGTGA GAGGTTGGGT
  TGACCTCTTA ACTTTCTGAG AAGCCATAGT TCTTGGGAAG TTGACATTGA GTTATTTAGC
  W
  GTGTGATTTA ATGGCATATA AAGTTGGAAT GGATACACTC ATTCAATTGA TACTTTTTCC
  TTGTGCCAAT ACTGTGCTAA ATGTCAGGAC ACAATGGATC AAATGACATC TTACGTTTAT
  TTGGGGAGAG AGACAAATAA TCACCACAGA GTTAAATACA TAACTGGAAA TTATGTGGAG
  AGGCAGGAGA CTGAAGGAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38311737	NES09523761	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28189712					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38311737	NES09523761	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101532652 () rs orientation: forward

Symbol	Name	Function Class
Rr596196	regulatory region 596196	234 bp distal
Rr596197	regulatory region 596197	212 bp proximal