rs28189710 SNP Detail

Summary

• ID
  rs28189710
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101532977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAGAGAC AAATAATCAC
  CACAGAGTTA AATACATAAC TGGAAATTAT GTGGAGAGGC AGGAGACTGA AGGAGCCAGC
  ACTGTAAAGA GCACGGTGGC AGAGTGGGGA GAGACTGATA CCTTGGAGTA AGTATCTAAG
  GATGTATGGA GAGTGCTCTC TCTGGGACTG AATGGAAGGC TGTCCTCAGG CAGGAGGATC
  W
  TGTGTGGGAC AGAGCGTGCT TCTGCTTTAA TCCATTTCAT ATTGTGAAAA CTTTCCAAAG
  CCTGAAAGAG AAACACAACA TCCCCTGCAC TTAGAACATC TACTTCCTCA GTGTAGTCTG
  GCCAGAAATG TGTCAAGAGC AAGCCTTCAA AGGGGCAGAT GTCAGCCCTC TGGCCTGTAA
  ACAAAATGCC CAAGATATTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38311735	NES09523763	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	A	A	A		A	A	A	A		A
ss321230926	CHEV_4_101348385	CHEVERUD	SCREENING_POP	f	SNP									A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28189710					SNP	A	A	A	A	T	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38311735	NES09523763	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101532977 () rs orientation: forward

Symbol	Name	Function Class
Rr596196	regulatory region 596196	559 bp distal
Rr596197	regulatory region 596197	within coordinates