rs28189702 SNP Detail

Summary

• ID
  rs28189702
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101534001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCAGGTAA GAGAAAGCAC
  AGGTGTTTAT ACAATCTCAT CTATAAAAGG ACTCATGTTT TATCTGAAAA CTAGTTTCCT
  TTATTTTACC TTTAGACATC TGGCTAAATG TCTCTAGGGA TGGATGCTCA CTTGGAAGCA
  AGTTCCCTGA CAGCTGCCAT TGGAGGTAGA GTCTTTGCTC TTTCCTTCCA AAAATAGCAG
  Y
  AATATCATTA TTTGGACCAC ATTCTGTGTT GCAGGGCTGT GTCAAGAGAG TTCATATTTG
  TTGTTTCTAA TGCTTCCAAG CAGCTAAGAA GTGATCATCT CACATACTTT AAAGGTGAAA
  AACTCAGGCA AGGTCACAAA ACTCAGAAGA GAGGTCACTT TGGCTGAACT CAACACATAG
  GCCCATTTCC AGACAATACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss38311727	NES09523771	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs28189702					SNP	T	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38311727	NES09523771	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101534001 () rs orientation: forward

Symbol	Name	Function Class
Rr596196	regulatory region 596196	1583 bp distal
Rr596197	regulatory region 596197	581 bp distal