rs28184338 SNP Detail

Summary

• ID
  rs28184338
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106077066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGCGTACAT ATATATTCTA TACTCTATGG CTCTATTTCT
  CTGGACACTC CTGGCAAACA AAAGACATCT GGTCAGAGCA TAGGACTGTA GGATAACTGT
  CCACTCCTTT GAAGACACAG TGACTGACCC ATTTTTAGTG TGGAAACCAG AGTGAAGCAA
  W
  CACGGACAAG CTGCCTTCCA AGGCCATTCC CCTTTTCTTG CTTTGGCCAG GATTTGTAGC
  GACCATTGTT GCTTACATGC TACAACGGTG TTTGTGAACG CAATCTCTTT CACATAACTT
  CACCGACCCA TTGAAATCTC TACAGAGCCA GACAGGCAAC CTCTTCTAGT CATTTCGGTC
  GGCTGCCTGA CTAGTATGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38290376	NES09492471	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28184338					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38290376	NES09492471	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106077066 () rs orientation: forward

Symbol	Name	Function Class
Gm12729	predicted gene 12729	within coordinates
Rr596704	regulatory region 596704	804 bp proximal