rs28181709 SNP Detail

Summary

• ID
  rs28181709
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:102711289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATTTTCA CTTTAATTAA
  ATATAAATCT TATCATAGGA CAGTTAGCAT TTTCTTGTGT CCTTCCATGC AAGAATATAA
  AATTGAGTCA ATAAAGTATT ACACAAATTA AAAAGTATTT CCTGCATCTA AAGGCACCGG
  GTAAAGTGCC TAGTGGGCTC CTTCATATTT AATAAGCATC AGCTCTGACG ACTCTCCTGA
  Y
  TGGTATAAAC TGGCAGTGAT GAGTTCCTCG TGAGCAATTC CCATGGAATT TCAGAGAAAG
  TTGAAGGTAA GAAAGGCCAC ATTTGGCCTG ATGCTTCCTG GCAGGAGGAC ATTGAGTCTA
  GCTTTCTAAA AGGTGAGGGG CTTTCTTTCA CACAAATGGA ATGAAAAAAG CAAAGGCAGA
  GAGGTGGGAA AGGTATCGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38307129	NES09530269	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28181709					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38307129	NES09530269	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102711289 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm69082	predicted gene, 69082			within coordinates
Rr596318	regulatory region 596318			312 bp distal
Rr596319	regulatory region 596319			1044 bp proximal
Sgip1	SH3-domain GRB2-like (endophilin) interacting protein 1			Intron
				Noncoding-Transcript-Variant