rs28181700 SNP Detail

Summary

• ID
  rs28181700
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:102711968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTTTACTG TGGTCCTGAA
  GCAATTTCTA AATGATTAAG TTAGGAATAT TTTTTTTCCT GAGCATCTAA TACTTTATAA
  TGCTTCTTGA TAAGTTTGCC ATTTTCTAAA TATTAACCAT CAAAATAAAA TAACATCCCT
  TACTCTCCCT TGGATACCTG TCTGTGTTCT TGCCCCAGTT CAGTCAGGAG AGTCTTCAGA
  M
  CTTGGAAATC ATGCAGTTCG TTACTTGGCC TCAGTTTCCT TACCTGGGAC AATGAGCTTT
  CTATGAGGTG ACGTCCAGGT CCCCTAGAAG GCCACACACT GAGCAGTCGG CCACACCTGG
  GGGCGGGGGG GAGGGTGGCA AAGAGATGGA AAGGGAGAGG GAGAAGAAAA GAGAGTGGGA
  GAGAAAAAGA GAGAGTAGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38307120	NES09530280	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	A	C		A	A	A	A	C	A	C	C	A
ss45605497	mCV22687264	ABI	CRAMUS_MOUSE	f	SNP		A	C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28181700					SNP	A	A	C	C	A	C	A	A	A	A	A	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38307120	NES09530280	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102711968 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm69082	predicted gene, 69082			within coordinates
Rr596318	regulatory region 596318			991 bp distal
Rr596319	regulatory region 596319			365 bp proximal
Rr596320	regulatory region 596320			1367 bp proximal
Sgip1	SH3-domain GRB2-like (endophilin) interacting protein 1			Intron
				Noncoding-Transcript-Variant