rs28176224 SNP Detail

Summary

• ID
  rs28176224
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:100319036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGACATGC ATGAAGGAAG
  CCTGGAATAA TGGTGCCTTT TAAATGCCCA TCCACAACTG CACTCAGACA TTATAAATGC
  CGTGTCTCTC AACAGATGGT GTTTTCCGGT GGGGAAATGA AAGGAGACCC AGTTCTCCTA
  AAACACTTCA GCACATGTAG TGTTCCTGGC CGACCCTGCA TACCTTCATC ACAGACACCT
  Y
  CAGCATCTTC CCTGAACATG ATTCTGAGCA TGACTTTCAT AACTTTCATT GTGGGGGTTT
  GTGTGCCAGC CTGTCATAGG AAACAAATTG GGTGCTTTTT AATAGCCAAG TTTCAAAACA
  AGTGAATGGC TTTTATCAAG TTATTACATA ATTCCCACTT AAAAAATAAA AAAAGACAAA
  AAAGTACTTT GGTGCTGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss38316448	NES09521007	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T		C	C	C	C
ss321227253	CHEV_4_100134444	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs28176224					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38316448	NES09521007	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100319036 () rs orientation: forward

Symbol	Name	Function Class
Gm69466	predicted gene, 69466	within coordinates
Rr595994	regulatory region 595994	655 bp proximal