rs28176209 SNP Detail

Summary

• ID
  rs28176209
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:100321137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTCCCATT AGGGCTGACT
  TGAGTCTTTT ATGCTCACAC CACAAAAATT CCTCCTCTCA AAGGCAAGTG TCCCCTTTAA
  CTTAACCACA GAACAAAGCT CATCATGTTC ACAACCCTGA AGATACCACA AGGATTGTGT
  ATGTCTCTGT GTGTCTATGC CTGTTGTAAA AGTAAAATAC AAACCTTATC TTTCAAACAC
  M
  GAGACCTATT TTTAGGAGGA TAAGATGAAA GTACAAGTCT TAGAAGGCCT GACTTAAATC
  TCCTTTCCAC CCAAAGGGAT GAAAATACTA AAATACAACA TATAATGAAC TATATCCCAA
  TGGCTAAGCA TGTTGAACAA TGTATAAGAT AATATAAATG TATGTATTAG TAAGTTACTA
  AAGTCCGAGA CTGTTCTTAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38316432	NES09520963	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	A	A	A	A	A	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28176209					SNP	C	A	A	A	A	A	A	A	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38316432	NES09520963	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100321137 () rs orientation: forward

Symbol	Name	Function Class
Gm18288	predicted gene, 18288	1935 bp upstream
Gm69466	predicted gene, 69466	within coordinates
Rr595994	regulatory region 595994	912 bp distal