rs28176207 SNP Detail

Summary

• ID
  rs28176207
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:100321355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATAAGATG AAAGTACAAG
  TCTTAGAAGG CCTGACTTAA ATCTCCTTTC CACCCAAAGG GATGAAAATA CTAAAATACA
  ACATATAATG AACTATATCC CAATGGCTAA GCATGTTGAA CAATGTATAA GATAATATAA
  ATGTATGTAT TAGTAAGTTA CTAAAGTCCG AGACTGTTCT TAATGAATAG ACAATGTGTA
  R
  TCAGGACACA CCTTTAGTAC CAAGTTAGGG ATGGGCATTG TTCCATACAG TGATGGTCTG
  CCTTTCCTAG GTGGGCAATT TAATGAGAGA GAACTATGAA AGCTAAGAGG CTGGTTCCAC
  CTGCTTTTCC TGATCCCTAG CCAACCTCTA GGCTTCTGCC AAGACCTAGC TCCCTGCCTA
  CAACCACCCA TAGGTCCCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38316430	NES09520966	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		A	A	A	A	A	G	A	A
ss45687777	mCV24687269	ABI	CRAMUS_MOUSE	f	SNP		G						A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28176207					SNP	G	G	A	A	A	A	A	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38316430	NES09520966	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100321355 () rs orientation: forward

Symbol	Name	Function Class
Gm18288	predicted gene, 18288	1717 bp upstream
Gm69466	predicted gene, 69466	within coordinates
Rr595994	regulatory region 595994	1130 bp distal