AAGGCCTGAC TTAAATCTCC TTTCCACCCA AAGGGATGAA AATACTAAAA TACAACATAT AATGAACTAT ATCCCAATGG CTAAGCATGT TGAACAATGT ATAAGATAAT ATAAATGTAT GTATTAGTAA GTTACTAAAG TCCGAGACTG TTCTTAATGA ATAGACAATG TGTAATCAGG ACACACCTTT AGTACCAAGT Y AGGGATGGGC ATTGTTCCAT ACAGTGATGG TCTGCCTTTC CTAGGTGGGC AATTTAATGA GAGAGAACTA TGAAAGCTAA GAGGCTGGTT CCACCTGCTT TTCCTGATCC CTAGCCAACC TCTAGGCTTC TGCCAAGACC TAGCTCCCTG CCTACAACCA CCCATAGGTC CCATTCAATA CCCAGATTTC CTATATTCTC Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss38316429 | NES09520967 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | T | T | C | T | T | T | C | T | T | T | T |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs28176206 | SNP | T | T | T | T | T | T | C | T | T | T | C | T | T | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss38316429 | NES09520967 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr4:100321381 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm18288 | predicted gene, 18288 | 1691 bp upstream | ||||||
Gm69466 | predicted gene, 69466 | within coordinates | ||||||
Rr595994 | regulatory region 595994 | 1156 bp distal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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