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rs28176206 SNP Detail
Summary
  • ID
    rs28176206
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr4:100321381 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAGGCCTGAC TTAAATCTCC
    TTTCCACCCA AAGGGATGAA AATACTAAAA TACAACATAT AATGAACTAT ATCCCAATGG
    CTAAGCATGT TGAACAATGT ATAAGATAAT ATAAATGTAT GTATTAGTAA GTTACTAAAG
    TCCGAGACTG TTCTTAATGA ATAGACAATG TGTAATCAGG ACACACCTTT AGTACCAAGT
    Y
    AGGGATGGGC ATTGTTCCAT ACAGTGATGG TCTGCCTTTC CTAGGTGGGC AATTTAATGA
    GAGAGAACTA TGAAAGCTAA GAGGCTGGTT CCACCTGCTT TTCCTGATCC CTAGCCAACC
    TCTAGGCTTC TGCCAAGACC TAGCTCCCTG CCTACAACCA CCCATAGGTC CCATTCAATA
    CCCAGATTTC CTATATTCTC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss38316429 NES09520967 PERLEGEN MM_PANEL2 f SNP T T T T T T C T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs28176206 SNP T T T T T T C T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss38316429 NES09520967 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:100321381 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm18288 predicted gene, 18288 1691 bp upstream
Gm69466 predicted gene, 69466 within coordinates
Rr595994 regulatory region 595994 1156 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory