rs28176206 SNP Detail

Summary

• ID
  rs28176206
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:100321381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCCTGAC TTAAATCTCC
  TTTCCACCCA AAGGGATGAA AATACTAAAA TACAACATAT AATGAACTAT ATCCCAATGG
  CTAAGCATGT TGAACAATGT ATAAGATAAT ATAAATGTAT GTATTAGTAA GTTACTAAAG
  TCCGAGACTG TTCTTAATGA ATAGACAATG TGTAATCAGG ACACACCTTT AGTACCAAGT
  Y
  AGGGATGGGC ATTGTTCCAT ACAGTGATGG TCTGCCTTTC CTAGGTGGGC AATTTAATGA
  GAGAGAACTA TGAAAGCTAA GAGGCTGGTT CCACCTGCTT TTCCTGATCC CTAGCCAACC
  TCTAGGCTTC TGCCAAGACC TAGCTCCCTG CCTACAACCA CCCATAGGTC CCATTCAATA
  CCCAGATTTC CTATATTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38316429	NES09520967	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28176206					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38316429	NES09520967	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100321381 () rs orientation: forward

Symbol	Name	Function Class
Gm18288	predicted gene, 18288	1691 bp upstream
Gm69466	predicted gene, 69466	within coordinates
Rr595994	regulatory region 595994	1156 bp distal