rs28176205 SNP Detail

Summary

• ID
  rs28176205
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:100321506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAAGTTAC TAAAGTCCGA
  GACTGTTCTT AATGAATAGA CAATGTGTAA TCAGGACACA CCTTTAGTAC CAAGTTAGGG
  ATGGGCATTG TTCCATACAG TGATGGTCTG CCTTTCCTAG GTGGGCAATT TAATGAGAGA
  GAACTATGAA AGCTAAGAGG CTGGTTCCAC CTGCTTTTCC TGATCCCTAG CCAACCTCTA
  S
  GCTTCTGCCA AGACCTAGCT CCCTGCCTAC AACCACCCAT AGGTCCCATT CAATACCCAG
  ATTTCCTATA TTCTCCTCCA GGGTCTAGCC TGGTGAGTAC CCCATTCCGT TCAATTCTCA
  CTTTTCCACA ATCCATTAGA TTTATCCTGG GTCCCATAAC CAGTGCAACA GCTTAATCTG
  GCCTCCCCTG CCTTCATTGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38316428	NES09520968	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28176205					SNP	G	G	G	G	G	G	C	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38316428	NES09520968	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100321506 () rs orientation: forward

Symbol	Name	Function Class
Gm18288	predicted gene, 18288	1566 bp upstream
Gm69466	predicted gene, 69466	within coordinates
Rr595994	regulatory region 595994	1281 bp distal