rs28172366 SNP Detail

Summary

• ID
  rs28172366
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:103654771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGCTGGGG AGGCAGCCAG
  CCACTCAAAG AAGAGATCAC AGGGGCAAAA ATGGAGATAG TTTGGGGCAA TGACAGGATA
  TTTCTTCAGG GTTTAGGACA GTGGCTGGAG ATGTCTAGGT ACTGTTCTAA CGCAGGACAT
  TGTAAAATCT GGCAGTCATA ATCTAATGAT TATGATGATC CTGTAAATCT CGAAAATACC
  Y
  ACCTCTTACT TTGGAGTTTT TGGCCTTGAA TGAGGAGGAT GACCAGTTTT AGGGGACACT
  CCTCAGACAG CTTGTGTCTG GGTGGAGCAG GAACCTGAGC CAAGTTTAGG GTAGCCAAGG
  AAACAGATAC AGACTAGAAA TGGAGATGCT GACGTTCTCC TGGACTGTTA CCATCTAGAG
  ATCTTTGAGA CCAAGTGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss38303091	NES09485350	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T		C	T	C	C
ss321238538	CHEV_4_103470179	CHEVERUD	SCREENING_POP	f	SNP								C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs28172366					SNP	T	T	T	T	T	T	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38303091	NES09485350	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:103654771 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dab1	disabled 1			Intron
				Noncoding-Transcript-Variant
Rr596416	regulatory region 596416			853 bp distal