rs28170778 SNP Detail

Summary

• ID
  rs28170778
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:102968256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATGGCCC TTCCTAGTGG
  GGGCTCGGCA GGCCTGGCTA GATACCTAGG TATGGCCTGT CTAGCTCTCT GGAAACCTGT
  GGGAACCAGA ACTCTCTCTG CCCTGGGGAT CTGAAGGCTA CTTTCTTCAG GACTCATGCT
  ATGCTATACT TGGCCACCAT CTCTTCTTTC TGAGATTCTG AAGTTGAATA CTCTCTCCAA
  Y
  TCTCCTTCAA AGTCCCATCA TGTTGTGTCC CTGTAGGATG CTCTATATCT TCTAATGTTC
  ACCTGCTTCA AGGTCCAGTC ATGCCCCCTC CCATATTCCC CCAGCCAACT CAATAGTAGT
  GAGGCTCTCT CTGGTTCAGC TCATTTTGAA GGGTAATCTC ATTGTCAAGT CTTTGCCATA
  CACCCACCTC TCTTTAAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38306007	NES09519417	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28170778					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38306007	NES09519417	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102968256 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnai4	dynein axonemal intermediate chain 4			Intron
				Noncoding-Transcript-Variant
E030030F06Rik	RIKEN cDNA E030030F06 gene			384 bp downstream
Rr596355	regulatory region 596355			1520 bp proximal