rs28170772 SNP Detail

Summary

• ID
  rs28170772
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:102969554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCATGGTA GCTTTTGTGT
  TTGTTTTGCA TTAATAAGTG TTATATCATT TTTGTCTTAA TTTGTATAAA TTTAATTTAG
  TTTCACTTTA ATATCTCCAT AAAGGCAAAA CAGAAATTAA GCAAGGAAAA AAACTTAAGT
  AACAAGCTAC AAATGTGTAT GTATCTACTT ATTTGTTCAG TTTACCAATG TGTACTAAAG
  W
  TGTTCTCCAT TCTAGGTAAG AGTCTACAGC AGTGCACAAA ACAAAAGAGG ACATAATATG
  AGCTGGGGGG GGGGGGGGCA CACCCACAAT CCCAAGAGGT TGGAGGCAGA GGCAGGAAGA
  TCTCTGTGAA TTAGAGCCAG CCTGGTTTAC AGAGAGTTCC AGAAACCCTG TCTTGAAAAA
  CTAAGGAAAA AAAAAAACCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38306001	NES09519332	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28170772					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38306001	NES09519332	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102969554 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14511	CpG island 14511			1540 bp proximal
Dnai4	dynein axonemal intermediate chain 4			Intron
				Noncoding-Transcript-Variant
E030030F06Rik	RIKEN cDNA E030030F06 gene			within coordinates
Rr596355	regulatory region 596355			222 bp proximal
Rr596356	regulatory region 596356			1548 bp proximal
Tssr42583	transcription start site region 42583			1853 bp downstream
Tssr42584	transcription start site region 42584			1865 bp downstream
Tssr42585	transcription start site region 42585			1881 bp downstream
Tssr42586	transcription start site region 42586			1948 bp downstream
Tssr42587	transcription start site region 42587			1959 bp downstream
Tssr42588	transcription start site region 42588			2000 bp downstream