rs28170771 SNP Detail

Summary

• ID
  rs28170771
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:102969796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATG GGGATAAACT CGAAGCGTAA
  Y
  AGCGTTCCTG GCCTATGTGT GTGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38306000	NES09519290	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C		C	T	T	C		T
ss321235890	CHEV_4_102785204	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28170771					SNP	T	T	T	T	T	T	C	T	T	C	C	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38306000	NES09519290	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102969796 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnai4	dynein axonemal intermediate chain 4			Intron
				Noncoding-Transcript-Variant
E030030F06Rik	RIKEN cDNA E030030F06 gene			within coordinates
Mier1	MEIR1 treanscription regulator			1791 bp upstream
Rr596355	regulatory region 596355			within coordinates
Rr596356	regulatory region 596356			1306 bp proximal
Rr596357	regulatory region 596357			1807 bp proximal
Rr596358	regulatory region 596358			1946 bp proximal
Tssr38082	transcription start site region 38082			1786 bp upstream
Tssr38083	transcription start site region 38083			1803 bp upstream
Tssr38084	transcription start site region 38084			1863 bp upstream
Tssr42583	transcription start site region 42583			1611 bp downstream
Tssr42584	transcription start site region 42584			1623 bp downstream
Tssr42585	transcription start site region 42585			1639 bp downstream
Tssr42586	transcription start site region 42586			1706 bp downstream
Tssr42587	transcription start site region 42587			1717 bp downstream
Tssr42588	transcription start site region 42588			1758 bp downstream
Tssr42589	transcription start site region 42589			1963 bp downstream