rs28170770 SNP Detail

Summary

• ID
  rs28170770
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:102969856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGCAGAG GCAGGAAGAT
  CTCTGTGAAT TAGAGCCAGC CTGGTTTACA GAGAGTTCCA GAAACCCTGT CTTGAAAAAC
  TAAGGAAAAA AAAAAACCTG GAGAATATAA TATACTCATG GGGATAAACT CGAAGCGTAA
  TAGCGTTCCT GGCCTATGTG TGTGTATATG TGCGTGTGTG TGCGTGCTGC GGGATGTTAC
  R
  TCATACTCAA GGGGCATAAT CCAAAGCCAG ATCCCGTGGG GACTTGGAAG AAAGGGAGCT
  CAGAGGGAAA GGGAAAAGCT TAAGGAAGTT TTGTGCAGAC TACTATGTGG AGGGTGTTGG
  CAAGCAGACG ATTCAGCCAG CTATTCCAAT GCAGAAATGA CTGTTAGGTC TGGAGAGCAC
  AGCTACTTGA CGAAGTGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38305999	NES09519291	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28170770					SNP	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38305999	NES09519291	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102969856 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14511	CpG island 14511			1238 bp proximal
Dnai4	dynein axonemal intermediate chain 4			Intron
				Noncoding-Transcript-Variant
E030030F06Rik	RIKEN cDNA E030030F06 gene			within coordinates
Mier1	MEIR1 treanscription regulator			1731 bp upstream
Rr596355	regulatory region 596355			within coordinates
Rr596356	regulatory region 596356			1246 bp proximal
Rr596357	regulatory region 596357			1747 bp proximal
Rr596358	regulatory region 596358			1886 bp proximal
Tssr38082	transcription start site region 38082			1726 bp upstream
Tssr38083	transcription start site region 38083			1743 bp upstream
Tssr38084	transcription start site region 38084			1803 bp upstream
Tssr42583	transcription start site region 42583			1551 bp downstream
Tssr42584	transcription start site region 42584			1563 bp downstream
Tssr42585	transcription start site region 42585			1579 bp downstream
Tssr42586	transcription start site region 42586			1646 bp downstream
Tssr42587	transcription start site region 42587			1657 bp downstream
Tssr42588	transcription start site region 42588			1698 bp downstream
Tssr42589	transcription start site region 42589			1903 bp downstream