rs28170769 SNP Detail

Summary

• ID
  rs28170769
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:102969983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCGAAGCG TAATAGCGTT
  CCTGGCCTAT GTGTGTGTAT ATGTGCGTGT GTGTGCGTGC TGCGGGATGT TACATCATAC
  TCAAGGGGCA TAATCCAAAG CCAGATCCCG TGGGGACTTG GAAGAAAGGG AGCTCAGAGG
  GAAAGGGAAA AGCTTAAGGA AGTTTTGTGC AGACTACTAT GTGGAGGGTG TTGGCAAGCA
  R
  ACGATTCAGC CAGCTATTCC AATGCAGAAA TGACTGTTAG GTCTGGAGAG CACAGCTACT
  TGACGAAGTG AAGTGGCCCT CAATGCTTGG CAGTAAAGAT GCAGGACCCA TACCGAGGAA
  GTGCAAGGGT TGCAGTTTAA TGAACTGGGA TGGCTGCGGA CTGGAAACAA AGGGGCAGTA
  AATTACAGCG CTGAGGATGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38305998	NES09519292	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28170769					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38305998	NES09519292	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102969983 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14511	CpG island 14511			1111 bp proximal
Dnai4	dynein axonemal intermediate chain 4			Intron
				Noncoding-Transcript-Variant
E030030F06Rik	RIKEN cDNA E030030F06 gene			within coordinates
Mier1	MEIR1 treanscription regulator			1604 bp upstream
Rr596355	regulatory region 596355			within coordinates
Rr596356	regulatory region 596356			1119 bp proximal
Rr596357	regulatory region 596357			1620 bp proximal
Rr596358	regulatory region 596358			1759 bp proximal
Tssr38082	transcription start site region 38082			1599 bp upstream
Tssr38083	transcription start site region 38083			1616 bp upstream
Tssr38084	transcription start site region 38084			1676 bp upstream
Tssr38085	transcription start site region 38085			1926 bp upstream
Tssr38086	transcription start site region 38086			1990 bp upstream
Tssr42583	transcription start site region 42583			1424 bp downstream
Tssr42584	transcription start site region 42584			1436 bp downstream
Tssr42585	transcription start site region 42585			1452 bp downstream
Tssr42586	transcription start site region 42586			1519 bp downstream
Tssr42587	transcription start site region 42587			1530 bp downstream
Tssr42588	transcription start site region 42588			1571 bp downstream
Tssr42589	transcription start site region 42589			1776 bp downstream