rs28169609 SNP Detail

Summary

• ID
  rs28169609
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:105305684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACAACCCA CTCAGATGCC
  TACCTTCTAT GCAAGGACTG ACTCTATGTT AGGAAGACTT GCTCTAGGCT GTGGTTGATT
  ACATCATCTG AAAGCCACAG CAGTTGAGAG CACTCTGGAC AAAACGTCTC AAAATCAGTT
  ATTGAACTAG CTTCTCACTG ATATTGTCTC CATTTGCTGA AAAGCTTATG AAATTCTTCA
  Y
  GAGAAAGCTT GAAACAGGCT CAAAATGACC TCATTTTCAT CCCCAGGTGT TAAAAAGATA
  AGCAAATGAC ATTCTTAAAG TATAATTGAT CAGTCCCATA GGATATGCTG GATAGGATGT
  TGTCATGACA AGGGGAGTGG CCTACTCTGC CCATCCCAGT CTCTGCTAAC TTCTCAGGAG
  AAGAAGCTAC AGGGTTATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38294042	NES09505550	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28169609					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38294042	NES09505550	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:105305684 () rs orientation: forward

Symbol	Name	Function Class
Rr596616	regulatory region 596616	750 bp proximal