rs28168534 SNP Detail

Summary

• ID
  rs28168534
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101565831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAATTCA TATGTCAGAA
  ATGTTTATGT CTTCACCATA ACCAAGCTTT GGATTATAAA CAATTTCTGA AGTTCACTTA
  TAAATGGATC CACCACTAAG CAGCACACAC GCACACACAC ACAATGGACA TTTGTATTTA
  TTAGTGTTTT AAATGAATGT GTTGCATAAT GTCAAGTACA TCTAACCTAT AATTAAAGCC
  Y
  GAATGTTGAA GTAACCGACG ATTGGGGTCA TGTATAAGAA CTGAAGGTGT GTATTTATGT
  CAGGCTTCTG AAATTTAATT CATTCCAAGT TGAGAATGTA ATGTCCTGTT TGTTGTAGTA
  AATCATCATT AACTTTTATT CTGTAGAGTT ATTAACAGTT TAATTTTCAA TTTAGAAACA
  ATTCTGTGGG TTTTTATTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38311555	NES09522371	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28168534					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38311555	NES09522371	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101565831 () rs orientation: forward

Symbol	Name	Function Class
Rr376927	regulatory region 376927	within coordinates
Rr596202	regulatory region 596202	1010 bp distal
Rr596203	regulatory region 596203	355 bp distal
Rr596204	regulatory region 596204	1802 bp proximal