rs28168533 SNP Detail

Summary

• ID
  rs28168533
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101566129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAATGTCCT GTTTGTTGTA
  GTAAATCATC ATTAACTTTT ATTCTGTAGA GTTATTAACA GTTTAATTTT CAATTTAGAA
  ACAATTCTGT GGGTTTTTAT TCTCATTACT TTTCTTCTCT GTGATCCGAA AAAACACAAG
  GCGATCTTTT AAAATTCCTT TTTCTTCATT CATATCTGAA ATGGAACTTT AAAAGCTTCG
  Y
  CAGAGGGGCT GGAGAGACGA CTCAGTGGTT AAGAACACTT ACTGCTCCAG AGTTCAGTTC
  CCAGCACTCA CGAGCATGTC CTAACTTGCA CTCTAGCATT CACAACCGTG TATCTGTAAT
  TCCAGTTCCA GAGAACATGA CATCCTCTGG GCCCCCGAGG GCCCTGCATG CTTGTGGCAT
  GCTTACACCG TGCAGACAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38311554	NES09522372	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28168533					SNP	C	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38311554	NES09522372	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101566129 () rs orientation: forward

Symbol	Name	Function Class
Rr376927	regulatory region 376927	within coordinates
Rr596202	regulatory region 596202	1308 bp distal
Rr596203	regulatory region 596203	653 bp distal
Rr596204	regulatory region 596204	1504 bp proximal